Publications
Articles listed below derive from interdisciplinary research projects supported by the CEMI research activities, which are posted on an on-going basis. Other publications involving Caltech microbiology can be found on individual web pages of the CEMI faculty.
- Griffin, Catherine;Oz, M. Tufan et al. (2024) Engineering plant–microbe communication for plant nutrient use efficiencyCurrent Opinion in Biotechnology; Vol. 88; pp. 103150DOI 10.1016/j.copbio.2024.103150
- Hurt, Robert C.;Jin, Zhiyang et al. (2024) Directed Evolution of Acoustic Reporter Genes Using High-Throughput Acoustic ScreeningACS Synthetic BiologyDOI 10.1021/acssynbio.4c00283
- Tan, Chieh-Hsiang;Wang, Ting-Yu et al. (2024) Single-tissue proteomics in Caenorhabditis elegans reveals proteins resident in intestinal lysosome-related organellesProceedings of the National Academy of Sciences; Vol. 121; No. 25DOI 10.1073/pnas.2322588121
- Dion-Kirschner, Hannah;Nguyen, Newton H et al. (2024) Evaluating the contribution of methanotrophy kinetics to uncertainty in the soil methane sinkEnvironmental Research Letters; Vol. 19; No. 6; pp. 064059DOI 10.1088/1748-9326/ad4c7a
- Griffiths, Jessica A.;Yoo, Bryan B. et al. (2024) Peripheral neuronal activation shapes the microbiome and alters gut physiologyCell Reports; Vol. 43; No. 4; pp. 113953DOI 10.1016/j.celrep.2024.113953
- Magkiriadou, Sofia;Stepp, Willi L. et al. (2024) Polyphosphate affects cytoplasmic and chromosomal dynamics in nitrogen-starved Pseudomonas aeruginosaProceedings of the National Academy of Sciences; Vol. 121; No. 15; pp. e2313004121DOI 10.1073/pnas.2313004121
- Silverman, Shaelyn N.;Wijker, Reto S. et al. (2024) Biosynthetic and catabolic pathways control amino acid δ²H values in aerobic heterotrophsFrontiers in Microbiology; Vol. 15; pp. 1338486DOI 10.3389/fmicb.2024.1338486
- Schwartz, Hillel T.;Tan, Chieh-Hsiang et al. (2024) Molecular identification of a peroxidase gene controlling body size in the entomopathogenic nematode Steinernema hermaphroditumGenetics; Vol. 226; No. 2; pp. iyad209DOI 10.1093/genetics/iyad209
- Osorio-Rodriguez, Daniela;Metcalfe, Kyle S. et al. (2023) Microbially induced precipitation of silica by anaerobic methane-oxidizing consortia and implications for microbial fossil preservationProceedings of the National Academy of Sciences; Vol. 120; No. 51; pp. e2302156120DOI 10.1073/pnas.2302156120
- Ling, Bill;Ko, Jeong Hoon et al. (2023) Gas Vesicle–Blood Interactions Enhance Ultrasound Imaging ContrastNano Letters; Vol. 23; No. 33; pp. 10748-10757DOI 10.1021/acs.nanolett.3c02780
- Jin, Zhiyang;Lakshmanan, Anupama et al. (2023) Ultrasonic reporters of calcium for deep tissue imaging of cellular signalsDOI 10.1101/2023.11.09.566364
- Hurt, Robert C.;Buss, Marjorie T. et al. (2023) Genomically mined acoustic reporter genes for real-time in vivo monitoring of tumors and tumor-homing bacteriaNature Biotechnology; Vol. 41; No. 7; pp. 919-931DOI 10.1038/s41587-022-01581-y
- Dutka, Przemysław;Metskas, Lauren Ann et al. (2023) Structure of Anabaena flos-aquae gas vesicles revealed by cryo-ETStructure; Vol. 31; No. 5; pp. 518-528DOI 10.1016/j.str.2023.03.011
- Wang, Grace Z.;Warren, Elizabeth A. et al. (2023) Staphylococcal secreted cytotoxins are competition sensing signals for Pseudomonas aeruginosaDOI 10.1101/2023.01.29.526047
- Wilkes, Elise B.;Sessions, Alex L. et al. (2022) Position-specific carbon isotope analysis of serine by gas chromatography/Orbitrap mass spectrometry, and an application to plant metabolismRapid Communications in Mass Spectrometry; Vol. 36; No. 18; pp. Art. No. e9347DOI 10.1002/rcm.9347
- Zeichner, Sarah S.;Wilkes, Elise B. et al. (2022) Methods and limitations of stable isotope measurements via direct elution of chromatographic peaks using gas chromotography-Orbitrap mass spectrometryInternational Journal of Mass Spectrometry; Vol. 477; pp. Art. No. 116848DOI 10.1016/j.ijms.2022.116848
- Dutka, Przemysław;Metskas, Lauren Ann et al. (2022) Structure of Anabaena flos-aquae gas vesicles revealed by cryo-ETDOI 10.1101/2022.06.21.496981
- Brückner, Adrian;Barnett, Austen A. et al. (2022) Molecular evolutionary trends and biosynthesis pathways in the Oribatida revealed by the genome of Archegozetes longisetosusAcarologia; Vol. 62; No. 2; pp. 532-573DOI 10.24349/pjye-gkeo
- Douglas, Madison M.;Li, Gen K. et al. (2022) Organic carbon burial by river meandering partially offsets bank erosion carbon fluxes in a discontinuous permafrost floodplainEarth Surface Dynamics; Vol. 10; No. 3; pp. 421-435DOI 10.5194/esurf-10-421-2022
- Greenwald, Noah F.;Miller, Geneva et al. (2022) Whole-cell segmentation of tissue images with human-level performance using large-scale data annotation and deep learningNature Biotechnology; Vol. 40; No. 4; pp. 555-565DOI 10.1038/s41587-021-01094-0
- Yu, Hang;Chadwick, Grayson L. et al. (2022) Comparative Genomics on Cultivated and Uncultivated Freshwater and Marine "Candidatus Manganitrophaceae" Species Implies Their Worldwide Reach in Manganese ChemolithoautotrophymBio; Vol. 13; No. 2; pp. Art. No. 03421-21DOI 10.1128/mbio.03421-21
- Needham, Brittany D.;Funabashi, Masanori et al. (2022) A gut-derived metabolite alters brain activity and anxiety behaviour in miceNature; Vol. 602; No. 7899; pp. 647-653DOI 10.1038/s41586-022-04396-8
- Yu, Hang;Skennerton, Connor T. et al. (2022) Sulfate differentially stimulates but is not respired by diverse anaerobic methanotrophic archaeaISME Journal; Vol. 16; No. 1; pp. 168-177DOI 10.1038/s41396-021-01047-0
- Magkiriadou, S.;Habel, A. et al. (2021) Polyphosphate affects cytoplasmic and chromosomal dynamics in nitrogen-starved Pseudomonas aeruginosaDOI 10.1101/2021.12.23.473106
- Abrams, Michael J.;Tan, Fayth Hui et al. (2021) A conserved strategy for inducing appendage regeneration in moon jellyfish, Drosophila, and miceeLife; Vol. 10; pp. e65092DOI 10.7554/eLife.65092
- Mondragón-Palomino, Octavio;Poceviciute, Roberta et al. (2021) 3D imaging for the quantification of spatial patterns in microbiota of the intestinal mucosaDOI 10.1101/2021.10.07.463215
- Perry, Elena K.;Siozios, Stefanos et al. (2021) Structure of an ant-myrmecophile-microbe communityDOI 10.1101/2021.10.04.462948
- Osorio‐Rodriguez, Daniela;Razo-Mejia, Manuel et al. (2021) Sulfur isotope fractionations constrain the biological cycling of dimethylsulfoniopropionate in the upper oceanLimnology and Oceanography; Vol. 66; No. 10; pp. 3607-3618DOI 10.1002/lno.11901
- Douglas, Madison M.;Lingappa, Usha F. et al. (2021) Impact of River Channel Lateral Migration on Microbial Communities across a Discontinuous Permafrost FloodplainApplied and Environmental Microbiology; Vol. 87; No. 20; pp. Art. No. e01339-21DOI 10.1128/aem.01339-21
- Dutka, Przemysław;Malounda, Dina et al. (2021) Measuring gas vesicle dimensions by electron microscopyProtein Science; Vol. 30; No. 5; pp. 1081-1086DOI 10.1002/pro.4056
- Hurt, Robert C.;Buss, Marjorie T. et al. (2021) Genomically Mined Acoustic Reporter Genes Enable In Vivo Monitoring of Tumors and Tumor-Homing BacteriaDOI 10.1101/2021.04.26.441537
- Yoo, Bryan B.;Griffiths, Jessica A et al. (2021) Neuronal Activation of the Gastrointestinal Tract Shapes the Gut Environment in MiceDOI 10.1101/2021.04.12.439539
- Dahlstrom, Kurt M.;Newman, Dianne K. (2021) Paraburkholderia edwinii protects Aspergillus sp. from phenazines by acting as a toxin spongeDOI 10.1101/2021.03.28.437412
- Nicolas, William J.;Ghosal, Debnath et al. (2021) Structure of the Bacterial Cellulose Ribbon and Its Assembly-Guiding Cytoskeleton by Electron CryotomographyJournal of Bacteriology; Vol. 203; No. 3; pp. Art. No. e00371-20DOI 10.1128/JB.00371-20
- Morrison, Muir;Razo-Mejia, Manuel et al. (2021) Reconciling kinetic and thermodynamic models of bacterial transcriptionPLOS Computational Biology; Vol. 17; No. 1; pp. Art. No. e1008572DOI 10.1371/journal.pcbi.1008572
- Ling, Bill;Lee, Justin et al. (2020) Biomolecular Ultrasound Imaging of Phagolysosomal FunctionACS Nano; Vol. 14; No. 9; pp. 12210-12221DOI 10.1021/acsnano.0c05912
- Brückner, Adrian;Kaltenpoth, Martin et al. (2020) De novo biosynthesis of simple aromatic compounds by an arthropod (Archegozetes longisetosus)Proceedings of the Royal Society of London. Series B, Biological Sciences; Vol. 287; No. 1934; pp. Art. No. 20201429DOI 10.1098/rspb.2020.1429
- Saunders, Scott H.;Tse, Edmund C. M. et al. (2020) Extracellular DNA Promotes Efficient Extracellular Electron Transfer by Pyocyanin in Pseudomonas aeruginosa BiofilmsCell; Vol. 182; No. 4; pp. 919-932DOI 10.1016/j.cell.2020.07.006
- Khazaei, Tahmineh;Williams, Rory L. et al. (2020) Metabolic multistability and hysteresis in a model aerobe-anaerobe microbiome communityScience Advances; Vol. 6; No. 33; pp. Art. No. eaba0353DOI 10.1126/sciadv.aba0353
- Razo-Mejia, Manuel;Marzen, Sarah et al. (2020) First-principles prediction of the information processing capacity of a simple genetic circuitPhysical Review E; Vol. 102; No. 2; pp. Art. No. 022404DOI 10.1103/PhysRevE.102.022404
- Yu, Hang;Leadbetter, Jared R. (2020) Bacterial chemolithoautotrophy via manganese oxidationNature; Vol. 583; No. 7816; pp. 453-458DOI 10.1038/s41586-020-2468-5
- Hirokawa, Soichi;Chure, Griffin et al. (2020) Sequence-Dependent Dynamics of Synthetic and Endogenous RSSs in V(D)J RecombinationNucleic Acids Research; Vol. 48; No. 12; pp. 6726-6739DOI 10.1093/nar/gkaa418
- Silva, Rebekah M. B.;Grodick, Michael A. et al. (2020) UvrC Coordinates an O₂-Sensitive [4Fe4S] CofactorJournal of the American Chemical Society; Vol. 142; No. 25; pp. 10964-10977DOI 10.1021/jacs.0c01671
- Donaldson, Gregory P.;Chou, Wen-Chi et al. (2020) Spatially distinct physiology of Bacteroides fragilis within the proximal colon of gnotobiotic miceNature Microbiology; Vol. 5; No. 5; pp. 746-756DOI 10.1038/s41564-020-0683-3
- Ward, Lewis M.;Lingappa, Usha F. et al. (2020) Microbial mats in the Turks and Caicos Islands reveal diversity and evolution of phototrophy in the Chloroflexota order AggregatilinealesEnvironmental Microbiome; Vol. 15; pp. Art. No. 9DOI 10.1186/s40793-020-00357-8
- Torres, Mark A.;Kemeny, Preston C. et al. (2020) Long-term storage and age‐biased export of fluvial organic carbon: field evidence from West IcelandGeochemistry, Geophysics, Geosystems; Vol. 21; No. 4; pp. Art. No. e2019GC008632DOI 10.1029/2019gc008632
- Davis, Hunter C.;Kang, Sunghwi et al. (2020) Nanoscale Heat Transfer from Magnetic Nanoparticles and Ferritin in an Alternating Magnetic FieldBiophysical Journal; Vol. 118; No. 6; pp. 1502-1510DOI 10.1016/j.bpj.2020.01.028
- Challis, Collin;Hori, Acacia et al. (2020) Gut-seeded α-synuclein fibrils promote gut dysfunction and brain pathology specifically in aged miceNature Neuroscience; Vol. 23; No. 3; pp. 327-336DOI 10.1038/s41593-020-0589-7
- Khazaei, Tahmineh;Williams, Rory L. et al. (2020) Metabolic multi-stability and hysteresis in a model aerobe-anaerobe microbiome communityDOI 10.1101/2020.02.28.968941
- Moen, Erick;Borba, Enrico et al. (2019) Accurate cell tracking and lineage construction in live-cell imaging experiments with deep learningDOI 10.1101/803205
- Porter, Michael K.;Steinberg, Asher Preska et al. (2019) Interplay of motility and polymer-driven depletion forces in the initial stages of bacterial aggregationSoft Matter; Vol. 15; No. 35; pp. 7071-7079DOI 10.1039/c9sm00791a
- Hanewich-Hollatz, Mikhail H.;Chen, Zhewei et al. (2019) Conditional Guide RNAs: Programmable Conditional Regulation of CRISPR/Cas Function in Bacterial and Mammalian Cells via Dynamic RNA NanotechnologyACS Central Science; Vol. 5; No. 7; pp. 1241-1249DOI 10.1021/acscentsci.9b00340
- Preska Steinberg, Asher;Wang, Zhen-Gang et al. (2019) Food Polyelectrolytes Compress the Colonic Mucus Hydrogel by a Donnan MechanismBiomacromolecules; Vol. 20; No. 7; pp. 2675-2683DOI 10.1021/acs.biomac.9b00442
- Chalkley, Matthew J.;Oyala, Paul H. et al. (2019) Cp* Noninnocence Leads to a Remarkably Weak C–H Bond via Metallocene ProtonationJournal of the American Chemical Society; Vol. 141; No. 11; pp. 4721-4729DOI 10.1021/jacs.9b00193
- Ward, Lewis M.;Shih, Patrick M. et al. (2019) Phototrophic Methane Oxidation in a Member of the Chloroflexi PhylumDOI 10.1101/531582
- Ward, Lewis M.;Shih, Patrick M. et al. (2019) Genomic Evidence for Phototrophic Oxidation of Small Alkanes in a Member of the Chloroflexi PhylumDOI 10.1101/531582
- Neubauer, Cajetan;Sessions, Alex L. et al. (2018) Towards measuring growth rates of pathogens during infections by D_2O-labeling lipidomicsRapid Communications in Mass Spectrometry; Vol. 32; No. 24; pp. 2129-2140DOI 10.1002/rcm.8288
- Schretter, Catherine E.;Vielmetter, Jost et al. (2018) A gut microbial factor modulates locomotor behavior in DrosophilaNature; Vol. 563; No. 7731; pp. 402-406DOI 10.1038/s41586-018-0634-9
- Michel, Alice J.;Ward, Lewis M. et al. (2018) The gut of the finch: uniqueness of the gut microbiome of the Galápagos vampire finchMicrobiome; Vol. 6; pp. Art. No. 167DOI 10.1186/s40168-018-0555-8
- Lu, George J.;Farhadi, Arash et al. (2018) Proteins, air and water: reporter genes for ultrasound and magnetic resonance imagingCurrent Opinion in Chemical Biology; Vol. 45; pp. 57-63DOI 10.1016/j.cbpa.2018.02.011
- Lewis, Russell D.;Garcia-Borràs, Marc et al. (2018) Catalytic iron-carbene intermediate revealed in a cytochrome c carbene transferaseProceedings of the National Academy of Sciences of the United States of America; Vol. 115; No. 28; pp. 7308-7313DOI 10.1073/pnas.1807027115
- Maresca, David;Lakshmanan, Anupama et al. (2018) Biomolecular Ultrasound and SonogeneticsAnnual Review of Chemical and Biomolecular Engineering; Vol. 9; pp. 229-252DOI 10.1146/annurev-chembioeng-060817-084034
- Rosenthal, Adam Z.;Qi, Yutao et al. (2018) Metabolic interactions between dynamic bacterial subpopulationseLife; Vol. 7; pp. Art. No. e33099DOI 10.7554/eLife.33099
- Chalkley, Matthew J.;Del Castillo, Trevor J. et al. (2018) Fe-Mediated Nitrogen Fixation with a Metallocene Mediator: Exploring pK_a Effects and Demonstrating ElectrocatalysisJournal of the American Chemical Society; Vol. 140; No. 19; pp. 6122-6129DOI 10.1021/jacs.8b02335
- Arnett, Charles H.;Chalkley, Matthew J. et al. (2018) A Thermodynamic Model for Redox-Dependent Binding of Carbon Monoxide at Site-Differentiated, High Spin Iron ClustersJournal of the American Chemical Society; Vol. 140; No. 16; pp. 5569-5578DOI 10.1021/jacs.8b01825
- Brandenberg, Oliver F.;Prier, Christopher K. et al. (2018) Stereoselective Enzymatic Synthesis of Heteroatom-Substituted CyclopropanesACS Catalysis; Vol. 8; No. 4; pp. 2629-2634DOI 10.1021/acscatal.7b04423
- Subramanian, Poorna;Pirbadian, Sahand et al. (2018) Ultrastructure of Shewanella oneidensis MR-1 nanowires revealed by electron cryotomographyProceedings of the National Academy of Sciences of the United States of America; Vol. 115; No. 14; pp. E3246-E3255DOI 10.1073/pnas.1718810115
- Knight, Anders M.;Kan, S. B. Jennifer et al. (2018) Diverse engineered heme proteins enable stereodivergent cyclopropanation of unactivated alkenesACS Central Science; Vol. 4; No. 3; pp. 372-377DOI 10.1021/acscentsci.7b00548
- Ward, Lewis M.;Hemp, James et al. (2018) Evolution of Phototrophy in the Chloroflexi Phylum Driven by Horizontal Gene TransferFrontiers in Microbiology; Vol. 9; pp. Art. No. 260DOI 10.3389/fmicb.2018.00260
- Davis, Hunter C.;Ramesh, Pradeep et al. (2018) Mapping the microscale origins of magnetic resonance image contrast with subcellular diamond magnetometryNature Communications; Vol. 9; pp. Art. No. 131DOI 10.1038/s41467-017-02471-7
- Niesen, Michiel J. M.;Marshall, Stephen S. et al. (2017) Improving membrane protein expression by optimizing integration efficiencyJournal of Biological Chemistry; Vol. 292; No. 47; pp. 19537-19545DOI 10.1074/jbc.M117.813469
- Piraner, Dan I.;Farhadi, Arash et al. (2017) Going Deeper: Biomolecular Tools for Acoustic and Magnetic Imaging and Control of Cellular FunctionBiochemistry; Vol. 56; No. 39; pp. 5202-5209DOI 10.1021/acs.biochem.7b00443
- Oikonomou, Catherine M.;Jensen, Grant J. (2017) Cellular Electron Cryotomography: Toward Structural Biology In SituAnnual Review of Biochemistry; Vol. 86; pp. 873-896DOI 10.1146/annurev-biochem-061516-044741
- Bedbrook, Claire N.;Rice, Austin J. et al. (2017) Structure-guided SCHEMA recombination generates diverse chimeric channelrhodopsinsProceedings of the National Academy of Sciences of the United States of America; Vol. 114; No. 13; pp. E2624-E2633DOI 10.1073/pnas.1700269114
- Herwig, Lukas;Rice, Austin J. et al. (2017) Directed Evolution of a Bright Near-Infrared Fluorescent Rhodopsin Using a Synthetic ChromophoreCell Chemical Biology; Vol. 24; No. 3; pp. 415-425DOI 10.1016/j.chembiol.2017.02.008
- Rittle, Jonathan;Peters, Jonas C. (2017) N-H Bond Dissociation Enthalpies and Facile H-atom Transfers for Early Intermediates of Fe-N₂ and Fe-CN ReductionsJournal of the American Chemical Society; Vol. 139; No. 8; pp. 3161-3170DOI 10.1021/jacs.6b12861
- Glenn, Weslee S.;Stone, Shannon E. et al. (2017) BONCAT enables time-resolved analysis of protein synthesis in native plant tissuePlant Physiology; Vol. 173; No. 3; pp. 1543-1553DOI 10.1104/pp.16.01762
- Stone, Shannon E.;Glenn, Weslee S. et al. (2017) Cell-selective proteomics for biological discoveryCurrent Opinion in Chemical Biology; Vol. 36; pp. 50-57DOI 10.1016/j.cbpa.2016.12.026
- Maker, Allison;Hemp, James et al. (2017) Draft Genome Sequence of Hydrogenibacillus schlegelii MA48, a Deep-Branching Member of the Bacilli Class of FirmicutesGenome Announcements; Vol. 5; No. 3; pp. Art. No. e00380-16DOI 10.1128/genomeA.00380-16
- Shih, P. M.;Hemp, J. et al. (2017) Crown group Oxyphotobacteria postdate the rise of oxygenGeobiology; Vol. 15; No. 1; pp. 19-29DOI 10.1111/gbi.12200
- Ho, Samuel H.;Tirrell, David A. (2016) Chemoenzymatic Labeling of Proteins for Imaging in Bacterial CellsJournal of the American Chemical Society; Vol. 138; No. 46; pp. 15098-15101DOI 10.1021/jacs.6b07067
- Hemp, James;Lücker, Sebastian et al. (2016) Genomics of a phototrophic nitrite oxidizer: insights into the evolution of photosynthesis and nitrificationISME Journal; Vol. 10; No. 11; pp. 2669-2678DOI 10.1038/ismej.2016.56
- Skennerton, Connor T.;Haroon, Mohamed F. et al. (2016) Phylogenomic analysis of Candidatus 'Izimaplasma' species: free-living representatives from a Tenericutes clade found in methane seepsISME Journal; Vol. 10; No. 11; pp. 2679-2692DOI 10.1038/ismej.2016.55
- DePas, William H.;Starwalt-Lee, Ruth et al. (2016) Exposing the Three-Dimensional Biogeography and Metabolic States of Pathogens in Cystic Fibrosis Sputum via Hydrogel Embedding, Clearing, and rRNA LabelingmBio; Vol. 7; No. 5; pp. e00796-16DOI 10.1128/mBio.00796-16
- Marshall, Stephen S.;Niesen, Michiel J. M. et al. (2016) A Link between Integral Membrane Protein Expression and Simulated Integration EfficiencyCell Reports; Vol. 16; No. 8; pp. 2169-2177DOI 10.1016/j.celrep.2016.07.042
- Fischer, Woodward W.;Hemp, James et al. (2016) Evolution of Oxygenic PhotosynthesisAnnual Review of Earth and Planetary Sciences; Vol. 44; pp. 647-683DOI 10.1146/annurev-earth-060313-054810
- Xiao, Cheng;Cho, Jounhong Ryan et al. (2016) Cholinergic Mesopontine Signals Govern Locomotion and Reward through Dissociable Midbrain PathwaysNeuron; Vol. 90; No. 2; pp. 333-347DOI 10.1016/j.neuron.2016.03.028
- Oikonomou, Catherine M.;Jensen, Grant J. (2016) A new view into prokaryotic cell biology from electron cryotomographyNature Reviews Microbiology; Vol. 14; No. 4; pp. 205-220DOI 10.1038/nrmicro.2016.7
- Rittle, Jonathan;Peters, Jonas C. (2016) An Fe-N₂ Complex That Generates Hydrazine and Ammonia via Fe═NNH₂: Demonstrating a Hybrid Distal-to-Alternating Pathway for N₂ ReductionJournal of the American Chemical Society; Vol. 138; No. 12; pp. 4243-4248DOI 10.1021/jacs.6b01230
- Ward, Lewis M.;Kirschvink, Joseph L. et al. (2016) Timescales of Oxygenation Following the Evolution of Oxygenic PhotosynthesisOrigins of life and evolution of the biosphere; Vol. 46; No. 1; pp. 51-65DOI 10.1007/s11084-015-9460-3
- Spatzal, Thomas;Perez, Kathryn A. et al. (2015) Catalysis-dependent selenium incorporation and migration in the nitrogenase active site iron-molybdenum cofactoreLife; Vol. 4; pp. Art. No. e11620DOI 10.7554/eLife.11620
- Hemp, James;Ward, Lewis M. et al. (2015) Draft Genome Sequence of Ardenticatena maritime 110S, a Thermophilic Nitrate- and Iron-Reducing Member of the Chloroflexi Class ArdenticateniaGenome Announcements; Vol. 3; No. 6; pp. Art. No. e01347-15DOI 10.1128/genomeA.01347-15
- Ward, Lewis M.;Hemp, James et al. (2015) Draft Genome Sequence of Herpetosiphon geysericola GC-42, a Nonphototrophic Member of the Chloroflexi Class ChloroflexiaGenome Announcements; Vol. 3; No. 6; pp. Art. No. e01352-15DOI 10.1128/genomeA.01352-15
- Ward, Lewis M.;Hemp, James et al. (2015) Draft Genome Sequence of Leptolinea tardivitalis YMTK-2, a Mesophilic Anaerobe from the Chloroflexi Class AnaerolineaeGenome Announcements; Vol. 3; No. 6; pp. Art. No. e01356-15DOI 10.1128/genomeA.01356-15
- Hemp, James;Ward, Lewis M. et al. (2015) Draft Genome Sequence of Levilinea saccharolytica KIBI-1, a Member of the Chloroflexi Class AnaerolineaeGenome Announcements; Vol. 3; No. 6; pp. Art. No. e01357-15DOI 10.1128/genomeA.01357-15
- Hemp, James;Ward, Lewis M. et al. (2015) Draft Genome Sequence of Ornatilinea apprima P3M-1, an Anaerobic Member of the Chloroflexi Class AnaerolineaeGenome Announcements; Vol. 3; No. 6; pp. Art. No. e01353-15DOI 10.1128/genomeA.01353-15
- Pace, Laura A.;Hemp, James et al. (2015) Draft Genome of Thermanaerothrix daxensis GNS-1, a Thermophilic Facultative Anaerobe from the Chloroflexi Class AnaerolineaeGenome Announcements; Vol. 3; No. 6; pp. Art. No. e01354-15DOI 10.1128/genomeA.01354-15
- Fischer, Woodward W.;Hemp, James et al. (2015) Manganese and the Evolution of PhotosynthesisOrigins of Life and Evolution of Biospheres; Vol. 45; No. 3; pp. 351-357DOI 10.1007/s11084-015-9442-5
- Rasmussen, Tim;Rasmussen, Akiko et al. (2015) Properties of the Mechanosensitive Channel MscS Pore Revealed by Tryptophan Scanning MutagenesisBiochemistry; Vol. 54; No. 29; pp. 4519-4530DOI 10.1021/acs.biochem.5b00294
- Anderson, John S.;Cutsail, George E., III et al. (2015) Characterization of an Fe≡N−NH₂ Intermediate Relevant to Catalytic N₂ Reduction to NH₃Journal of the American Chemical Society; Vol. 137; No. 24; pp. 7803-7809DOI 10.1021/jacs.5b03432
- Yano, Jessica M.;Yu, Kristie et al. (2015) Indigenous Bacteria from the Gut Microbiota Regulate Host Serotonin BiosynthesisCell; Vol. 161; No. 2; pp. 264-276DOI 10.1016/j.cell.2015.02.047
- Booth, Ian R.;Miller, Samantha et al. (2015) The evolution of bacterial mechanosensitive channelsCell Calcium; Vol. 57; No. 3; pp. 140-150DOI 10.1016/j.ceca.2014.12.011
- Grodick, Michael A.;Muren, Natalie B. et al. (2015) DNA Charge Transport within the CellBiochemistry; Vol. 54; No. 4; pp. 962-973DOI 10.1021/bi501520w
- Zhang, Li-Mei;Morrison, Christine N. et al. (2015) Nitrogenase MoFe protein from Clostridium pasteurianum at 1.08 Å resolution: comparison with the Azotobacter vinelandii MoFe proteinActa Crystallographica Section D: Biological Crystallography; Vol. 71; No. 2; pp. 274-282DOI 10.1107/S1399004714025243
- Spatzal, Thomas;Perez, Kathryn A. et al. (2014) Ligand binding to the FeMo-cofactor: Structures of CO-bound and reactivated nitrogenaseScience; Vol. 345; No. 6204; pp. 1620-1623DOI 10.1126/science.1256679
- Grodick, Michael A.;Segal, Helen M. et al. (2014) DNA-Mediated Signaling by Proteins with 4Fe−4S Clusters Is Necessary for Genomic IntegrityJournal of the American Chemical Society; Vol. 136; No. 17; pp. 6470-6478DOI 10.1021/ja501973c
- Booth, Ian R. (2014) Bacterial mechanosensitive channels: progress towards an understanding of their roles in cell physiologyCurrent Opinion in Microbiology; Vol. 18; pp. 16-22DOI 10.1016/j.mib.2014.01.005
- Lucey, Kaitlyn S.;Leadbetter, Jared R. (2014) Catechol 2,3-dioxygenase and other meta-cleavage catabolic pathway genes in the "anaerobic" termite gut spirochete Treponema primitiaMolecular Ecology; Vol. 23; No. 6; pp. 1531-1543DOI 10.1111/mec.12598
- Pilhofer, Martin;Aistleitner, Karin et al. (2014) Architecture and host interface of environmental chlamydiae revealed by electron cryotomographyEnvironmental Microbiology; Vol. 16; No. 2; pp. 417-429DOI 10.1111/1462-2920.12299
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